Function
score
Returns the score for aligning the characters valH and valV.
score(score, entry1, entry2)
score(score, value1, value2) [deprecated]
Include Headers
seqan/score.h
Parameters
score
The scoring scheme to use.
A scoring scheme.
Types: Score, Score
entry1
Entry in sequence one.
entry2
Entry in sequence two.
value1
Aligned character in the first sequence.
value2
Aligned character in the second sequence.
Status
The version that explicitely requires two characters is deprecated. For using (or defining) custom scoring schemes better use the functions score, scoreGapOpenVertical, scoreGapExtendVertical, scoreGapOpenHorizontal and scoreGapExtendHorizontal as they require character positions and sequences and allow for position-dependent scoring schemes.
Member of
SeqAn - Sequence Analysis Library - www.seqan.de
 

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